Ann M. Hermundstad

I lead a group at Janelia Research Campus. I apply methods from physics to the study of complex biological systems. To read more about the problems that I work on, check out the links above.

email: hermundstada at janelia dot hhmi dot org

Computational Resources

Below, I've collected some of the various computational resources that I've found helpful

NATURAL SCENE ANALYSES

Penn Natural Image Database: [PNID]

images without manmade objects*: [index file]
images without manmade objects and with minimal sky*: [index file]

*compiled by John Briguglio, a grad student in the Physics of Living Matter Group at Penn

Image Segmentation

Insight Segmentation and Registration Toolkit (ITK): [website]
MATLAB Image Enhancement and Analysis: [website]

NETWORK ANALYSES

Brain Connectivity Toolbox (BCT): [Matlab]
Simple graph structures: [Python]

LATEX

[templates]
equations and symbols: [basic] [in-depth]
markup comparison between two tex files [latexdiff]